STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6820Conserved domain protein. (323 aa)    
Predicted Functional Partners:
CUS_7372
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.866
CUS_7064
Hypothetical protein.
  
  
  0.702
CUS_7642
Putative glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.
     
 0.678
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.666
CUS_6562
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
 
 
 0.661
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
    
 0.616
CUS_7715
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.608
CUS_6446
Hypothetical protein.
  
  
  0.544
CUS_5001
Hypothetical protein.
  
  
  0.540
CUS_7589
Putative beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
  
  
  0.535
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.