Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6840ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (423 aa)    
Predicted Functional Partners:
CUS_7186
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.781
CUS_6465
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.780
CUS_6841
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.773
CUS_7037
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.765
CUS_6470
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.760
CUS_6464
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.744
CUS_5880
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.732
CUS_6469
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.732
CUS_7038
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.722
CUS_6131
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.711
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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