Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6843Hypothetical protein. (138 aa)    
Predicted Functional Partners:
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.678
CUS_5513
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
  
 
 0.482
CUS_6841
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
   
   0.480
CUS_6842
Hypothetical protein; Identified by glimmer; putative.
       0.480
CUS_5875
Clostripain family; Identified by match to protein family HMM PF03415.
 
 
  0.467
CUS_6840
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
       0.443
CUS_7513
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
 
   0.443
CUS_5556
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
 
   0.440
CUS_6027
Hypothetical protein.
  
 
   0.439
CUS_8119
Dockerin type I repeat protein.
  
 
   0.439
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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