CUS_6882 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CUS_6882

Conserved domain protein. (180 aa)

Predicted Functional Partners:

CUS_8023

0.975

CUS_4775

0.630

CUS_5025

0.605

CUS_5626

0.587

CUS_6884

0.553

CUS_6885

0.553

add

0.548

CUS_4767

0.534

CUS_4682

0.528

CUS_4774

0.515

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4682	CUS_5626	CUS_4682	CUS_5626	Identified by match to protein family HMM PF08011.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.494
CUS_4682	CUS_6882	CUS_4682	CUS_6882	Identified by match to protein family HMM PF08011.	Conserved domain protein.	0.528
CUS_4767	CUS_6882	CUS_4767	CUS_6882	Ankyrin repeat protein; Identified by match to protein family HMM PF00023.	Conserved domain protein.	0.534
CUS_4767	CUS_6884	CUS_4767	CUS_6884	Ankyrin repeat protein; Identified by match to protein family HMM PF00023.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.518
CUS_4767	CUS_6885	CUS_4767	CUS_6885	Ankyrin repeat protein; Identified by match to protein family HMM PF00023.	ABC-2 type transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061.	0.481
CUS_4774	CUS_4775	CUS_4774	CUS_4775	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4774	CUS_5626	CUS_4774	CUS_5626	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.478
CUS_4774	CUS_6882	CUS_4774	CUS_6882	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Conserved domain protein.	0.515
CUS_4775	CUS_4774	CUS_4775	CUS_4774	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.952
CUS_4775	CUS_5626	CUS_4775	CUS_5626	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	0.512
CUS_4775	CUS_6882	CUS_4775	CUS_6882	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Conserved domain protein.	0.630
CUS_5025	CUS_6882	CUS_5025	CUS_6882	Hypothetical protein.	Conserved domain protein.	0.605
CUS_5626	CUS_4682	CUS_5626	CUS_4682	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Identified by match to protein family HMM PF08011.	0.494
CUS_5626	CUS_4774	CUS_5626	CUS_4774	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.478
CUS_5626	CUS_4775	CUS_5626	CUS_4775	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.512
CUS_5626	CUS_6882	CUS_5626	CUS_6882	Nucleotidyltransferase domain protein; Identified by match to protein family HMM PF01909.	Conserved domain protein.	0.587
CUS_6882	CUS_4682	CUS_6882	CUS_4682	Conserved domain protein.	Identified by match to protein family HMM PF08011.	0.528
CUS_6882	CUS_4767	CUS_6882	CUS_4767	Conserved domain protein.	Ankyrin repeat protein; Identified by match to protein family HMM PF00023.	0.534
CUS_6882	CUS_4774	CUS_6882	CUS_4774	Conserved domain protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.515
CUS_6882	CUS_4775	CUS_6882	CUS_4775	Conserved domain protein.	Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.630