STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6895Conserved domain protein. (143 aa)    
Predicted Functional Partners:
CUS_6896
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
 
    0.815
CUS_6894
Hypothetical protein; Identified by glimmer; putative.
       0.768
CUS_7752
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.671
CUS_5414
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.653
CUS_6893
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.635
CUS_7455
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
     0.611
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
  
     0.607
CUS_8108
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
     0.606
CUS_6046
Conserved domain protein.
  
     0.595
CUS_6610
GDSL-like protein.
  
     0.584
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.