Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6907Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (747 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.842
CUS_6688
Putative catabolite control protein A; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
    0.760
CUS_6128
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.755
CUS_6644
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.748
CUS_7547
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883.
  
   0.747
CUS_5269
Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
    0.742
CUS_7148
Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
  
    0.730
CUS_7983
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.721
CUS_7670
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883.
  
     0.709
CUS_7182
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
  
 
   0.704
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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