STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6913Putative sporulation protein YunB. (207 aa)    
Predicted Functional Partners:
ytfJ
Sporulation protein YtfJ; Identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874.
  
   
 0.720
CUS_7810
Putative stage III sporulation protein AE.
  
     0.707
CUS_6805
Sporulation protein, YlmC/YmxH family; Identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888.
  
   
 0.694
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.676
CUS_5366
Putative sporulation protein YqfD.
  
     0.663
CUS_7134
Hypothetical protein.
  
     0.653
CUS_7808
Stage III sporulation protein AC; Identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848.
  
     0.647
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
  
     0.623
ypeB
Germination protein YpeB; Identified by match to protein family HMM TIGR02889.
  
     0.616
spoIVB
SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
  
   
 0.616
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.