Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6949Hypothetical protein. (438 aa)    
Predicted Functional Partners:
CUS_6950
Conserved domain protein.
 
     0.957
CUS_6946
DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271.
 
     0.954
CUS_5020
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.884
CUS_5347
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.884
CUS_6948
Putative topology modulation protein.
  
    0.801
CUS_6947
Hypothetical protein; Identified by glimmer; putative.
       0.762
CUS_7787
Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.
   
 
 0.751
CUS_5019
NLPA lipoprotein; Identified by match to protein family HMM PF03180.
  
 0.698
CUS_5348
NLPA lipoprotein; Identified by match to protein family HMM PF03180.
  
 0.698
metF
Methylenetetrahydrofolate reductase (NAD(P)H); Identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family.
   
 
 0.615
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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