Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_6971Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family. (387 aa)    
Predicted Functional Partners:
CUS_5545
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
 
  
  0.964
CUS_7478
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; match to protein family HMM PF07943; Belongs to the peptidase S11 family.
 
  
  0.959
CUS_6614
Putative serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
 
  
 
0.894
CUS_7775
Transglycosylase; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912.
   
 
 0.894
CUS_6548
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
 
 0.840
CUS_6084
Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557.
     
 0.834
CUS_6622
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02557.
     
 0.834
CUS_6821
Putative lipoprotein.
     
 0.734
CUS_7755
Beta-lactamase; Identified by match to protein family HMM PF00144.
     
 0.671
spoVAD
Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.
 
   
 0.641
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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