CUS_6981 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6981

Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149. (131 aa)

Predicted Functional Partners:

gpsA

0.746

uppS

0.653

CUS_5973

0.565

pyrH

0.478

frr

0.433

cdsA

0.430

CUS_6979

0.415

CUS_7819

0.400

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5973	CUS_6981	CUS_5973	CUS_6981	Identified by match to protein family HMM PF04237.	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	0.565
CUS_6979	CUS_6981	CUS_6979	CUS_6981	Conserved domain protein.	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	0.415
CUS_6979	gpsA	CUS_6979	CUS_6980	Conserved domain protein.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.427
CUS_6981	CUS_5973	CUS_6981	CUS_5973	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Identified by match to protein family HMM PF04237.	0.565
CUS_6981	CUS_6979	CUS_6981	CUS_6979	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Conserved domain protein.	0.415
CUS_6981	CUS_7819	CUS_6981	CUS_7819	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	0.400
CUS_6981	cdsA	CUS_6981	CUS_6985	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	0.430
CUS_6981	frr	CUS_6981	CUS_6983	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.433
CUS_6981	gpsA	CUS_6981	CUS_6980	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.746
CUS_6981	pyrH	CUS_6981	CUS_6982	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.478
CUS_6981	uppS	CUS_6981	CUS_6984	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.653
CUS_7819	CUS_6981	CUS_7819	CUS_6981	Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	0.400
CUS_7819	uppS	CUS_7819	CUS_6984	Polyprenyl synthetase; Identified by match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.954
cdsA	CUS_6981	CUS_6985	CUS_6981	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	0.430
cdsA	frr	CUS_6985	CUS_6983	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.886
cdsA	gpsA	CUS_6985	CUS_6980	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.648
cdsA	pyrH	CUS_6985	CUS_6982	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.	0.856
cdsA	uppS	CUS_6985	CUS_6984	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.	0.980
frr	CUS_6981	CUS_6983	CUS_6981	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	Secondary thiamine-phosphate synthase enzyme; Identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149.	0.433
frr	cdsA	CUS_6983	CUS_6985	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.	0.886