Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7014Flavodoxin; Identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753. (134 aa)    
Predicted Functional Partners:
CUS_6736
Hypothetical protein.
 
     0.815
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.582
CUS_7011
Putative membrane protein; Identified by match to protein family HMM PF00892.
  
   0.521
CUS_7013
Hypothetical protein; Identified by glimmer; putative.
       0.486
CUS_7012
Conserved domain protein.
       0.477
CUS_7015
Putative restriction-modification system control element Bcll; Identified by match to protein family HMM PF01381.
       0.437
CUS_6735
Hypothetical protein.
 
    0.424
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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