Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7035NHL repeat protein; Identified by match to protein family HMM PF01436. (682 aa)    
Predicted Functional Partners:
CUS_7036
Conserved domain protein.
 
    0.950
CUS_7032
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
    0.928
CUS_7037
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    0.923
CUS_7033
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    0.921
CUS_7034
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    0.893
CUS_7039
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
    0.865
CUS_7787
Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.
    
  0.860
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
  0.859
CUS_6466
Conserved domain protein.
 
    0.789
CUS_5644
Putative linear gramicidin synthetase LgrC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733.
  
 
  0.786
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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