CUS_7035 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7035

NHL repeat protein; Identified by match to protein family HMM PF01436. (682 aa)

Predicted Functional Partners:

CUS_7036

0.950

CUS_7032

0.928

CUS_7037

0.923

CUS_7033

0.921

CUS_7034

0.893

CUS_7039

0.865

CUS_6254

0.824

CUS_7787

0.821

guaA

0.819

CUS_5644

0.800

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5644	CUS_7035	CUS_5644	CUS_7035	Putative linear gramicidin synthetase LgrC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733.	NHL repeat protein; Identified by match to protein family HMM PF01436.	0.800
CUS_5644	CUS_7787	CUS_5644	CUS_7787	Putative linear gramicidin synthetase LgrC; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733.	Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.	0.646
CUS_6254	CUS_7035	CUS_6254	CUS_7035	Competence/damage-inducible protein CinA C-terminal domain protein; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.	NHL repeat protein; Identified by match to protein family HMM PF01436.	0.824
CUS_7032	CUS_7033	CUS_7032	CUS_7033	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.971
CUS_7032	CUS_7034	CUS_7032	CUS_7034	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.963
CUS_7032	CUS_7035	CUS_7032	CUS_7035	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	NHL repeat protein; Identified by match to protein family HMM PF01436.	0.928
CUS_7032	CUS_7036	CUS_7032	CUS_7036	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	Conserved domain protein.	0.930
CUS_7032	CUS_7037	CUS_7032	CUS_7037	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.962
CUS_7032	CUS_7039	CUS_7032	CUS_7039	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.857
CUS_7033	CUS_7032	CUS_7033	CUS_7032	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.971
CUS_7033	CUS_7034	CUS_7033	CUS_7034	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.982
CUS_7033	CUS_7035	CUS_7033	CUS_7035	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	NHL repeat protein; Identified by match to protein family HMM PF01436.	0.921
CUS_7033	CUS_7036	CUS_7033	CUS_7036	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.921
CUS_7033	CUS_7037	CUS_7033	CUS_7037	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.980
CUS_7033	CUS_7039	CUS_7033	CUS_7039	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.874
CUS_7034	CUS_7032	CUS_7034	CUS_7032	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.963
CUS_7034	CUS_7033	CUS_7034	CUS_7033	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.982
CUS_7034	CUS_7035	CUS_7034	CUS_7035	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	NHL repeat protein; Identified by match to protein family HMM PF01436.	0.893
CUS_7034	CUS_7036	CUS_7034	CUS_7036	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.895
CUS_7034	CUS_7037	CUS_7034	CUS_7037	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.979