STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ara43AGlycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family. (320 aa)    
Predicted Functional Partners:
CUS_7030
Putative lipoprotein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.830
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
   
 0.799
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.776
CUS_4663
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
 
   
 0.773
CUS_7040
Conserved domain protein.
 
   
 0.764
CUS_6903
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF00652.
 
   
 0.761
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.760
xyl43A
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
 
   
 0.738
CUS_7042
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.737
CUS_6624
Identified by match to protein family HMM PF07944.
 
     0.677
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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