Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7045Identified by match to protein family HMM PF00149. (857 aa)    
Predicted Functional Partners:
CUS_7044
Methyltransferase domain protein; Identified by match to protein family HMM PF08242.
 
 
   0.978
CUS_6060
Methyltransferase domain protein; Identified by match to protein family HMM PF08241; match to protein family HMM PF08242.
   
   0.799
CUS_5259
Identified by match to protein family HMM PF05762.
  
     0.658
CUS_5261
ATPase, AAA family; Identified by match to protein family HMM PF07728.
  
     0.658
CUS_5260
Hypothetical protein.
  
     0.647
CUS_5257
Hypothetical protein.
  
     0.552
CUS_7876
Hypothetical protein.
 
     0.532
CUS_7058
Identified by match to protein family HMM TIGR02452.
  
     0.525
CUS_7874
Identified by match to protein family HMM TIGR02452.
  
     0.454
CUS_5444
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF01839.
  
     0.452
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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