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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7066Oxidoreductase, aldo/keto reductase family protein; Identified by match to protein family HMM PF00248. (383 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
   
 
  0.917
CUS_4899
Oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00175.
  
  0.646
pyrK
Putative dihydroorotate oxidase, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
  0.646
CUS_7065
Beta-lactamase; Identified by match to protein family HMM PF00144.
       0.492
CUS_4425
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
 
  
  0.446
CUS_7834
Flavin reductase; Identified by match to protein family HMM PF03358.
  
     0.421
CUS_5571
Identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268.
 
    0.420
CUS_6918
Phosphoribosylformylglycinamidine synthase; Identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857.
   
 
  0.417
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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