STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7074ABC-2 type transporter; Identified by match to protein family HMM PF01061. (259 aa)    
Predicted Functional Partners:
rfbB
O-antigen ABC transporter, ATP-binding protein RfbB; Identified by match to protein family HMM PF00005.
 
 0.999
CUS_7619
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.610
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
  
 0.555
CUS_7075
Hypothetical protein; Identified by glimmer; putative.
       0.541
CUS_7620
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.
 
  
 0.532
CUS_4341
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.529
CUS_6341
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.529
CUS_5336
Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
     
 0.515
CUS_7279
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.
 
  
 0.501
CUS_7972
Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
    
  0.458
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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