Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7083Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (750 aa)    
Predicted Functional Partners:
CUS_7084
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.953
CUS_7112
ABC transporter, ATP-binding protein.
 
   0.753
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
 
 0.709
CUS_5173
Conserved domain protein.
  
  
 0.563
CUS_7472
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.549
CUS_5588
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.486
CUS_5025
Hypothetical protein.
  
     0.422
CUS_8106
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
     0.419
CUS_7138
Putative lipoprotein.
  
     0.418
CUS_5540
S4 domain protein; Identified by match to protein family HMM PF01479.
   
    0.403
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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