STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7088ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (253 aa)    
Predicted Functional Partners:
CUS_7087
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.981
CUS_7089
ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF03180; match to protein family HMM PF04069.
 
 
  0.969
CUS_5310
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.920
CUS_6268
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.920
CUS_4698
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.919
CUS_5309
Identified by match to protein family HMM PF09084.
 
 
  0.878
CUS_6118
Identified by match to protein family HMM PF04069; match to protein family HMM PF09084.
 
 
  0.874
CUS_6270
Identified by match to protein family HMM PF09084.
 
 
  0.861
CUS_4697
Conserved domain protein.
 
 
  0.717
cooS
Carbon-monoxide dehydrogenase, catalytic subunit.
 
     0.635
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.