STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7093Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (324 aa)    
Predicted Functional Partners:
CUS_7094
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.923
CUS_7092
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
    0.888
CUS_7091
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.885
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.815
CUS_5448
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.653
rpoA
RNA polymerase, alpha subunit C-terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.641
CUS_4433
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.638
CUS_6817
ABC transporter, ATP-binding protein.
  
    0.590
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.574
CUS_5443
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.574
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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