Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
CUS_7109Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532. (243 aa)    
Predicted Functional Partners:
CUS_7956
Putative general secretion pathway protein E; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 0.908
CUS_7963
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
 
  
 0.886
CUS_7957
Bacterial peptidase A24, N-terminal domain protein; Identified by match to protein family HMM PF01478; match to protein family HMM PF06750.
 
  
 0.799
CUS_7046
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
    
 0.755
CUS_7955
Twitching motility protein; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.631
CUS_7103
Prepilin-type cleavage/methylation N-terminal domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 
0.609
CUS_4913
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
 
  
 0.597
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
    0.499
CUS_7962
Conserved domain protein.
 
  
 0.411
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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