Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7113Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (904 aa)    
Predicted Functional Partners:
CUS_7112
ABC transporter, ATP-binding protein.
 
 
 0.949
CUS_7084
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.758
CUS_7472
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.628
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
 
 
 0.565
CUS_7111
Transcriptional regulator, TetR family.
 
  
 0.541
CUS_5588
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.529
CUS_7471
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.
 
0.515
CUS_5503
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
0.507
CUS_7138
Putative lipoprotein.
  
     0.431
CUS_7962
Conserved domain protein.
  
     0.430
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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