STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7145DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. (135 aa)    
Predicted Functional Partners:
CUS_7144
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_6516
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.772
CUS_5453
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.750
CUS_7143
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
    
  0.726
CUS_6254
Competence/damage-inducible protein CinA C-terminal domain protein; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.
    
 0.657
CUS_7779
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.644
CUS_5527
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.626
CUS_4649
Hypothetical protein.
    
   0.533
CUS_4723
Hypothetical protein.
  
   0.514
CUS_5528
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.495
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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