Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_7145DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. (135 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
  0.805
CUS_7144
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_6516
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.772
CUS_5453
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.750
CUS_7143
Hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type; Identified by match to protein family HMM PF05681; match to protein family HMM TIGR00722.
    
  0.746
CUS_7779
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.644
CUS_5527
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.626
CUS_5528
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.495
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
     
  0.425
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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