STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7148Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532. (336 aa)    
Predicted Functional Partners:
CUS_6644
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
     0.772
CUS_7983
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
     0.767
CUS_6857
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00532.
  
     0.736
CUS_6907
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
    0.730
CUS_7521
Phosphocarrier, HPr family; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
    
 
 0.723
CUS_7149
Putative lipoprotein.
 
     0.677
CUS_4311
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
    0.634
CUS_6101
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
  
     0.623
CUS_7150
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.532
CUS_7151
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.498
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (24%) [HD]