STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7151ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (291 aa)    
Predicted Functional Partners:
CUS_7149
Putative lipoprotein.
 
  0.991
CUS_7150
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.985
CUS_5716
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.938
CUS_7042
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.938
CUS_7190
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 0.937
CUS_7202
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 0.937
CUS_5881
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.928
CUS_6130
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.927
CUS_7033
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.926
CUS_7037
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.926
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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