STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7171Conserved domain protein. (239 aa)    
Predicted Functional Partners:
CUS_8055
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
 
 0.960
CUS_8054
Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.
 
  
 0.919
sufC
FeS assembly ATPase SufC.
       0.440
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
       0.440
CUS_7071
Identified by match to protein family HMM PF04892.
 
     0.432
CUS_7174
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
       0.427
CUS_7175
Cysteine desulfurase, SufS family; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.427
CUS_7176
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
       0.427
CUS_7177
Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
       0.427
CUS_6867
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.
 
  
 0.426
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.