STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCFeS assembly ATPase SufC. (249 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 0.999
CUS_7174
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
 
 
 0.996
CUS_7176
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
 
  
 0.980
CUS_7175
Cysteine desulfurase, SufS family; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.978
CUS_6945
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
 
 
 0.944
CUS_6359
Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.
 
  
 0.833
CUS_5231
Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
 
  
 0.778
CUS_7177
Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
     
 0.758
CUS_7253
Hypothetical protein.
  
  
 0.685
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
      
 0.613
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.