STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CUS_7175Cysteine desulfurase, SufS family; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (415 aa)    
Predicted Functional Partners:
CUS_7176
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
 
 
 0.995
CUS_7174
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
 
 0.993
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 
 0.980
sufC
FeS assembly ATPase SufC.
 
  
 0.979
CUS_7253
Hypothetical protein.
  
 
 0.904
CUS_5657
Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.
  
 
 0.785
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
 
 0.784
CUS_7177
Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
       0.774
CUS_6945
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
  
 
 0.690
CUS_6944
Putative FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005.
  
  
 0.674
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.