CUS_7176 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7176

SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994. (143 aa)

Predicted Functional Partners:

CUS_7174

0.997

CUS_7175

0.995

sufB

0.984

sufC

0.982

CUS_6359

0.954

CUS_5231

0.951

CUS_6256

0.945

nifS

0.945

CUS_7177

0.862

CUS_6945

0.764

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5231	CUS_6256	CUS_5231	CUS_6256	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.423
CUS_5231	CUS_6945	CUS_5231	CUS_6945	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	0.690
CUS_5231	CUS_7174	CUS_5231	CUS_7174	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	0.848
CUS_5231	CUS_7176	CUS_5231	CUS_7176	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.951
CUS_5231	sufB	CUS_5231	CUS_7173	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.805
CUS_5231	sufC	CUS_5231	CUS_7172	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	FeS assembly ATPase SufC.	0.786
CUS_6256	CUS_5231	CUS_6256	CUS_5231	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.423
CUS_6256	CUS_6359	CUS_6256	CUS_6359	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	0.433
CUS_6256	CUS_7176	CUS_6256	CUS_7176	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.945
CUS_6256	CUS_7177	CUS_6256	CUS_7177	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.754
CUS_6256	nifS	CUS_6256	CUS_6898	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	Cysteine desulfurase NifS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.	0.873
CUS_6359	CUS_6256	CUS_6359	CUS_6256	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	Aminotransferase, class V; Identified by match to protein family HMM PF00266.	0.433
CUS_6359	CUS_6945	CUS_6359	CUS_6945	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	0.690
CUS_6359	CUS_7174	CUS_6359	CUS_7174	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	0.885
CUS_6359	CUS_7176	CUS_6359	CUS_7176	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.954
CUS_6359	sufB	CUS_6359	CUS_7173	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.	0.856
CUS_6359	sufC	CUS_6359	CUS_7172	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	FeS assembly ATPase SufC.	0.839
CUS_6945	CUS_5231	CUS_6945	CUS_5231	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	Aminotransferase, class V; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.690
CUS_6945	CUS_6359	CUS_6945	CUS_6359	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	0.690
CUS_6945	CUS_7174	CUS_6945	CUS_7174	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	SufB/sufD domain protein; Identified by match to protein family HMM PF01458.	0.734