STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7179Clostripain family; Identified by match to protein family HMM PF03415. (773 aa)    
Predicted Functional Partners:
CUS_7748
Hypothetical protein.
  
 
 0.883
CUS_5153
PASTA domain protein; Identified by match to protein family HMM PF03793.
   
 
 0.849
CUS_5818
Putative serine/threonine-protein kinase PrkC; Identified by match to protein family HMM PF00069; match to protein family HMM PF01163; match to protein family HMM PF03793; match to protein family HMM PF07714.
   
 
 0.849
CUS_5106
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.791
CUS_7923
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
 
 0.791
ribA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.760
CUS_5429
FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581.
  
     0.718
CUS_7180
Hypothetical protein; Identified by glimmer; putative.
       0.689
CUS_5823
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM TIGR01167.
  
     0.647
CUS_6548
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
   
 0.606
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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