Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7185ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (354 aa)    
Predicted Functional Partners:
CUS_7190
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.956
CUS_7186
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.953
CUS_5880
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.821
CUS_5883
Putative lipoprotein.
 
 
 0.760
CUS_7187
Putative lipoprotein.
  
 
  0.734
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
 
     0.717
CUS_6470
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  
  0.715
CUS_6840
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
 
 0.708
CUS_7037
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  
  0.699
CUS_8107
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
 
 0.697
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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