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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7190ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (352 aa)    
Predicted Functional Partners:
CUS_4266
Hypothetical protein.
  
 0.968
CUS_7185
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.956
CUS_6131
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.928
CUS_7186
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.928
CUS_7151
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.925
CUS_7150
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.924
CUS_6130
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.919
CUS_7033
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.905
CUS_7037
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.901
CUS_7038
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.901
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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