STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7193Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family. (513 aa)    
Predicted Functional Partners:
CUS_7194
Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470.
   
 0.991
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
 0.873
CUS_7200
Identified by match to protein family HMM PF01261.
 
     0.855
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.837
CUS_7181
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.830
CUS_6296
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF07470.
 
   
 0.783
CUS_5047
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.774
pelA
Pectate lyase; Identified by match to protein family HMM PF01095; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
  
  
 0.771
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
 
     0.641
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01832.
 
     0.596
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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