STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7194Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470. (375 aa)    
Predicted Functional Partners:
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
     0.992
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.847
CUS_7200
Identified by match to protein family HMM PF01261.
 
    0.835
CUS_7181
Pectinesterase; Identified by match to protein family HMM PF01095.
 
     0.779
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
  0.770
CUS_5047
Pectinesterase; Identified by match to protein family HMM PF01095.
 
     0.753
pelA
Pectate lyase; Identified by match to protein family HMM PF01095; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
     0.746
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01832.
 
     0.688
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
    
  0.656
CUS_7192
Hypothetical protein; Identified by glimmer; putative.
       0.595
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.