STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7204SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666. (492 aa)    
Predicted Functional Partners:
CUS_7203
Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.
 
 0.995
CUS_7199
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.865
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.851
CUS_7274
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
    
 0.847
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01832.
  
  
 0.775
rpiB
Ribose-5-phosphate isomerase B; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120.
     
 0.760
CUS_6942
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
    
 0.643
CUS_7207
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
    
 0.643
CUS_4588
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
     
 0.640
fabG
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.640
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.