STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase; Identified by match to protein family HMM PF02614. (464 aa)    
Predicted Functional Partners:
CUS_7273
Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.
 
 
 0.977
CUS_7203
Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.
 
 
 0.976
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.973
araD
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596; match to protein family HMM TIGR00760.
     
 0.908
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
   
 0.825
CUS_7195
Family 4 glycosyl hydrolase; Identified by match to protein family HMM PF02056.
 
  
  0.785
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
     
 0.778
CUS_7589
Putative beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; match to protein family HMM PF02929.
 
 
 0.759
CUS_7654
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
    
  0.754
xylB
Xylulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
     
 0.735
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.