Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7209Identified by match to protein family HMM PF03629. (610 aa)    
Predicted Functional Partners:
aguA
Alpha-glucuronidase; Identified by match to protein family HMM PF07477.
 
     0.899
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
  
 
   0.729
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
  
     0.713
CUS_6229
N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).
 
     0.696
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
 
   0.685
CUS_4654
Putative esterase; Identified by match to protein family HMM PF00756.
  
 
   0.661
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
  
  
  0.656
CUS_5611
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
  
  0.641
CUS_5821
Hypothetical protein; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.
 
     0.636
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.618
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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