Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aguAAlpha-glucuronidase; Identified by match to protein family HMM PF07477. (650 aa)    
Predicted Functional Partners:
CUS_7209
Identified by match to protein family HMM PF03629.
 
     0.899
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
 
   
 0.786
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
 
   
 0.783
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.750
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
   
 0.742
xyn11F
Carbohydrate binding domain protein; Identified by match to protein family HMM PF00457; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.738
xyn10B
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00041; match to protein family HMM PF00331; match to protein family HMM PF02018.
 
   
 0.730
CUS_7675
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.702
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
 
   
 0.678
CUS_6624
Identified by match to protein family HMM PF07944.
  
     0.673
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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