Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_7217Conserved domain protein. (279 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
     
  0.782
CUS_7218
Sortase, SrtB family.
       0.752
CUS_7216
Hypothetical protein; Identified by glimmer; putative.
       0.645
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
 
 0.631
CUS_4754
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
    
  0.613
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
     
 0.553
CUS_7215
Signal peptidase I; Identified by match to protein family HMM TIGR02228.
       0.542
CUS_7219
Cna protein B-type domain protein.
    
  0.461
CUS_7748
Hypothetical protein.
   
  
 0.418
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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