Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7218Sortase, SrtB family. (254 aa)    
Predicted Functional Partners:
CUS_6253
Sortase, SrtB family.
  
     0.774
CUS_6252
Sortase, SrtB family.
  
     0.773
CUS_7217
Conserved domain protein.
       0.752
CUS_5438
Sortase, SrtB family.
  
 
   0.685
CUS_7219
Cna protein B-type domain protein.
 
 
   0.633
CUS_7216
Hypothetical protein; Identified by glimmer; putative.
       0.585
CUS_7215
Signal peptidase I; Identified by match to protein family HMM TIGR02228.
       0.528
CUS_7471
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.
  
   
 0.488
nrdD-2
Anaerobic ribonucleoside-triphosphate reductase; Identified by match to protein family HMM PF01228; match to protein family HMM PF03477; match to protein family HMM TIGR02487.
  
     0.424
CUS_5503
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
   
 0.400
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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