STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7228ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (478 aa)    
Predicted Functional Partners:
CUS_6465
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  0.780
CUS_6466
Conserved domain protein.
  
     0.770
CUS_6467
Conserved domain protein.
  
    0.764
CUS_7962
Conserved domain protein.
  
     0.759
CUS_6468
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01436; match to protein family HMM PF07719.
  
     0.755
CUS_6470
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
  0.746
CUS_6471
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
     0.740
CUS_5603
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
     0.727
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
  
     0.723
CUS_6101
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
    0.716
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.