CUS_7231 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7231

Identified by match to protein family HMM PF00881. (164 aa)

Predicted Functional Partners:

CUS_7230

0.773

CUS_7232

0.773

iorA-2

0.773

CUS_5646

0.732

CUS_5657

0.696

CUS_7853

0.676

birA

0.635

ribF

0.623

CUS_7455

0.617

CUS_5073

0.583

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5073	CUS_5646	CUS_5073	CUS_5646	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.918
CUS_5073	CUS_5657	CUS_5073	CUS_5657	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	0.703
CUS_5073	CUS_7231	CUS_5073	CUS_7231	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00881.	0.583
CUS_5073	CUS_7853	CUS_5073	CUS_7853	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Identified by match to protein family HMM PF00881.	0.583
CUS_5646	CUS_5073	CUS_5646	CUS_5073	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.918
CUS_5646	CUS_5657	CUS_5646	CUS_5657	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	0.916
CUS_5646	CUS_7231	CUS_5646	CUS_7231	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Identified by match to protein family HMM PF00881.	0.732
CUS_5646	CUS_7232	CUS_5646	CUS_7232	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Putative indolepyruvate ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF01558.	0.421
CUS_5646	CUS_7853	CUS_5646	CUS_7853	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	Identified by match to protein family HMM PF00881.	0.732
CUS_5646	birA	CUS_5646	CUS_7358	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.669
CUS_5657	CUS_5073	CUS_5657	CUS_5073	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.703
CUS_5657	CUS_5646	CUS_5657	CUS_5646	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.916
CUS_5657	CUS_7231	CUS_5657	CUS_7231	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	Identified by match to protein family HMM PF00881.	0.696
CUS_5657	CUS_7853	CUS_5657	CUS_7853	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	Identified by match to protein family HMM PF00881.	0.696
CUS_7230	CUS_7231	CUS_7230	CUS_7231	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF00881.	0.773
CUS_7230	CUS_7232	CUS_7230	CUS_7232	Hypothetical protein; Identified by glimmer; putative.	Putative indolepyruvate ferredoxin oxidoreductase, beta subunit; Identified by match to protein family HMM PF01558.	0.773
CUS_7230	iorA-2	CUS_7230	CUS_7233	Hypothetical protein; Identified by glimmer; putative.	Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.	0.773
CUS_7231	CUS_5073	CUS_7231	CUS_5073	Identified by match to protein family HMM PF00881.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.583
CUS_7231	CUS_5646	CUS_7231	CUS_5646	Identified by match to protein family HMM PF00881.	AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.	0.732
CUS_7231	CUS_5657	CUS_7231	CUS_5657	Identified by match to protein family HMM PF00881.	Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; overlaps another CDS with the same product name.	0.696