STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7246ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (248 aa)    
Predicted Functional Partners:
CUS_7247
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
 
 0.973
ecfA
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.896
CUS_6472
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.872
CUS_5021
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 
  
 
0.791
CUS_5588
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.788
CUS_6753
Putative bacteriocin ABC transporter; Identified by match to protein family HMM PF00005.
 
     0.703
CUS_4702
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.619
CUS_5415
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
    0.510
CUS_7245
Hypothetical protein; Identified by glimmer; putative.
       0.510
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 
0.487
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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