Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_7261Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508. (618 aa)    
Predicted Functional Partners:
CUS_7264
Hypothetical protein.
 
     0.895
CUS_7263
Hypothetical protein.
 
    0.884
CUS_7262
Hypothetical protein.
 
    
0.834
CUS_4738
Hypothetical protein; Identified by glimmer; putative.
  
     0.662
CUS_7260
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
 
     0.661
CUS_7259
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
 
    0.578
CUS_7894
Recombinase; Identified by match to protein family HMM PF07508.
  
     0.439
CUS_4525
DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.407
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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