STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7269Conserved domain protein. (168 aa)    
Predicted Functional Partners:
CUS_7270
Putative lipoprotein.
       0.601
CUS_5005
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.520
CUS_4720
Hypothetical protein.
  
     0.491
CUS_5744
Conserved domain protein.
  
     0.470
CUS_7271
Hypothetical protein; Identified by glimmer; putative.
       0.443
CUS_8003
Hypothetical protein.
  
     0.441
CUS_7272
Identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.417
CUS_6737
FeoA domain protein; Identified by match to protein family HMM PF04023.
  
     0.415
CUS_7389
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
  
     0.411
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.