CUS_7274 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_7274

Kinase, PfkB family; Identified by match to protein family HMM PF00294. (337 aa)

Predicted Functional Partners:

eda

0.965

uxuA

0.874

CUS_7204

0.847

rpe

0.820

CUS_7273

0.803

guaA

0.798

CUS_5336

0.753

CUS_6335

0.749

cmk

0.721

CUS_7203

0.706

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5336	CUS_7274	CUS_5336	CUS_7274	Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	0.753
CUS_6335	CUS_7203	CUS_6335	CUS_7203	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.836
CUS_6335	CUS_7273	CUS_6335	CUS_7273	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.855
CUS_6335	CUS_7274	CUS_6335	CUS_7274	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	0.749
CUS_6335	rpe	CUS_6335	CUS_6588	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.	0.866
CUS_7203	CUS_6335	CUS_7203	CUS_6335	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	0.836
CUS_7203	CUS_7204	CUS_7203	CUS_7204	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	0.995
CUS_7203	CUS_7274	CUS_7203	CUS_7274	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	0.706
CUS_7203	rpe	CUS_7203	CUS_6588	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.	0.470
CUS_7203	uxuA	CUS_7203	CUS_7275	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.773
CUS_7204	CUS_7203	CUS_7204	CUS_7203	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.995
CUS_7204	CUS_7273	CUS_7204	CUS_7273	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.616
CUS_7204	CUS_7274	CUS_7204	CUS_7274	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	0.847
CUS_7204	uxuA	CUS_7204	CUS_7275	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.851
CUS_7273	CUS_6335	CUS_7273	CUS_6335	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	0.855
CUS_7273	CUS_7204	CUS_7273	CUS_7204	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	SAF domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.	0.616
CUS_7273	CUS_7274	CUS_7273	CUS_7274	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	0.803
CUS_7273	rpe	CUS_7273	CUS_6588	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.	0.426
CUS_7273	uxuA	CUS_7273	CUS_7275	Mannitol dehydrogenase C-terminal domain protein; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.	0.982
CUS_7274	CUS_5336	CUS_7274	CUS_5336	Kinase, PfkB family; Identified by match to protein family HMM PF00294.	Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.	0.753