STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7286Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (501 aa)    
Predicted Functional Partners:
CUS_6472
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.853
CUS_7283
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
   0.784
CUS_5133
Efflux transporter, RND family, MFP subunit.
 
   0.685
CUS_6466
Conserved domain protein.
  
     0.652
CUS_6467
Conserved domain protein.
  
     0.641
CUS_6468
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01436; match to protein family HMM PF07719.
  
     0.631
CUS_6473
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.630
CUS_6471
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
     0.613
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
  
 0.567
CUS_5173
Conserved domain protein.
  
  
 0.563
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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