Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_7292Conserved domain protein; Overlaps another CDS with the same product name. (562 aa)    
Predicted Functional Partners:
CUS_7293
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
 
  
 0.945
CUS_7294
Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005.
 
     0.943
CUS_7291
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.930
CUS_8074
Putative membrane protein.
 
  
 0.790
CUS_8075
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.777
CUS_8072
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.693
CUS_7295
Hypothetical protein; Identified by glimmer; putative.
       0.625
CUS_7296
Conserved domain protein.
       0.625
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
       0.625
CUS_7290
Conserved domain protein.
 
     0.570
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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