STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7311Dockerin type I repeat protein; Identified by match to protein family HMM PF00404. (631 aa)    
Predicted Functional Partners:
CUS_4266
Hypothetical protein.
    
   0.806
CUS_6734
Putative lipoprotein.
   
 
 0.751
CUS_7157
Putative lipoprotein.
   
 
 0.751
CUS_4678
Hypothetical protein; Identified by glimmer; putative.
     
 0.739
CUS_7313
Hypothetical protein.
 
     0.733
CUS_7319
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.692
CUS_7318
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.650
CUS_7321
Putative lipoprotein.
 
     0.614
rseP
RIP metalloprotease RseP; Identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054.
   
  
 0.579
CUS_7312
Conserved domain protein.
       0.516
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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