STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7320ABC transporter, ATP-binding protein. (531 aa)    
Predicted Functional Partners:
CUS_7321
Putative lipoprotein.
     0.985
CUS_7319
Conserved domain protein; Overlaps another CDS with the same product name.
 
 0.975
CUS_7318
Conserved domain protein; Overlaps another CDS with the same product name.
 
     0.942
CUS_7313
Hypothetical protein.
 
     0.835
ecfA
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
0.742
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
0.742
CUS_6815
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.730
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 0.724
CUS_7317
Hypothetical protein; Identified by glimmer; putative.
       0.709
CUS_6814
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.699
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.