STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_7329Hypothetical protein. (399 aa)    
Predicted Functional Partners:
CUS_7330
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
  
    0.773
CUS_6245
Putative alginate O-acetyltransferase AlgI; Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
  
  0.768
CUS_7331
Conserved domain protein.
    
  0.768
CUS_7391
Identified by match to protein family HMM PF03062.
 
  
  0.767
CUS_5732
Putative alginate O-acetyltransferase AlgI; Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
  
  0.739
CUS_4916
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
  
  0.721
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
  
 
  0.679
CUS_6247
Conserved domain protein.
 
     0.569
CUS_7332
Hypothetical protein; Identified by glimmer; putative.
       0.567
CUS_5076
Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
  
  0.553
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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